EBS BA 25.11: Analysis Request Manager (ARM)

Analysis Request Manager (ARM)

Analysis Request Manager (ARM) updates improve accuracy and reliability by aligning experiment and program filtering, stabilizing MOA processing, and ensuring smooth navigation and complete prediction outputs across workflows.

Accurate Experiment & Program Filtering

  • Users now see only the correct experiments for their active program.

  • ARM and PDM filtering behavior is aligned.

MOA Stability & Accuracy Improvements

  • Voided jobs removed from MOA dropdowns.

  • Creator logging is now accurate across programs.

  • MOA correctly processes Bioflow SOA results.

Processing & Navigation Fixes

  • Analysis requests no longer get stuck in processing.

  • “Go to page” navigation in prediction tables works reliably.

  • Entry type is now included in predictions and SOA exports.

EBS BA 25.11: Phenotypic Data Manager (PDM)

Phenotypic Data Manager (PDM)

Phenotypic Data Manager (PDM) updates improve data quality control by applying QC codes consistently across traits and using clearer interface wording to prevent unintended bulk changes.

✅ Clearer QC Code Behavior

  • QC code updates now clearly apply to all trait data.

  • UI wording prevents accidental bulk changes.

EBS BA 25.11: Molecular Data Analysis (MDA)

Molecular Data Analysis (MDA)

Molecular Data Analysis (MDA) updates enhance data accuracy and usability by delivering complete genotype metadata, reliable HapMap exports, correct filtering and display, and validated QTL profiling for confident analysis.

Complete Heterozygosity & Call Rate Metadata

  • Full sample and marker metadata now displays correctly.

  • Filtering, downloads, and UI views align with backend calculations.

HapMap Export Fully Enabled

  • Genotype data can now be exported in HapMap format via UI and API.

  • ZIP downloads include clean HapMap files and supporting metadata.

Improved Genotype Filtering & Display

  • Excluded samples and markers no longer appear incorrectly.

  • Marker and sample counts now reflect accurate totals.

QTL Profiling Fully Validated

  • Workflows are validated, stable, and ready for broader use.

EBS CB 25.11: Germplasm Manager (GM)

Germplasm Manager (GM)

Germplasm Manager (GM) updates improve performance and reliability by restoring report generation, accelerating searches, stabilizing printouts, and ensuring smooth germplasm creation and uploads for more dependable day-to-day data management.

✅ Faster Printout Performance

  • Small/medium selections run reliably with fewer errors.

✅Report Generation Restored

  • Germplasm reports export without failures.

✅Printout Modal Now Loads

  • All germplasm records load the modal correctly.

✅Search Performance Improved

  • Faster searches, including parent filtering and large datasets.

✅Germplasm Upload Fixed

  • Seed code sequence aligned, ensuring clean uploads.

✅Relation Update Working

  • Templates recognized correctly; variables handled accurately.

✅Printout Reporting Restored

  • Reporting now works across germplasm and occurrence templates.

✅Internal Server Error Resolved

  • Germplasm creation now completes without backend errors.

EBS-CB 25.09: Core Breeding Known Limitations

⚠️Core Breeding Known Limitations

These are known tool limitations. Workarounds are available, and fixes are scheduled for upcoming releases to enhanced reliability and user experience.

Experiment Creation

  • Package Selection: Inactive or discarded packages may still appear for selection.
    • Workaround: Verify package status before use. Update in progress.

Experiment Manager

  • Germplasm Code: Missing in exports.
    • Current Action: Field renaming under review.
  • Templates: Some printout templates are not visible for certain programs.
  • Cross Table: Does not update automatically after entry replacement.
    • Workaround: Refresh Crosses Browser manually.
  • Downloads: Some buttons and traits are missing in exports.
    • Current Action: Config validation ongoing.
  • CSV Inconsistencies: Duplicate/missing entries in exported files.
    • Current Action: Replication in progress.
  • Multi-occurrence Files: Download errors.
    • Current Action: Verify and retry.
  • Data Misalignment: Inconsistent headers for planting/management data.
    • Current Action: Data under review.

Data Collection

  • Time Series Upload: Only one occurrence uploads when files contain multiple.
  • Workaround: Upload files per occurrence. Fix planned in a future sprint.

BrAPI

  • Field Data Import: Plot information may be missing in the new import UI due to a technical mapping issue.
    • Workaround: Use the old Field Book import UI. Fix under collaboration with PhenoApps.

Seed Inventory

  • Admin Access: Admins require program membership to access the IM tool; RBAC alignment is planned.
  • RSHT Data: Data not visible in the Shipment Outgoing tool; update to seed_data table in progress.

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